Whole-genome Duplication Reshaped Adaptive Evolution in A Relict Plant Species, Cyclocarya paliurus

作者：Qu, Yinquan; Shang, Xulan; Zeng, Ziyan; Yu, Yanhao; Bian, Guoliang; Wang, Wenling; Liu, Li; Tian, Li; Zhang, Shengcheng; Wang, Qian; Xie, Dejin; Chen, Xuequn; Liao, Zhenyang; Wang, Yibin; Qin, Jian; Yang, Wanxia; Sun, Caowen; Fu, Xiangxiang^*; Zhang, Xingtan^*; Fang, Shengzuo^*

来源：GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 21(3): 455-469.

DOI：10.1016/j.gpb.2023.02.0011672-0229

• Cyclocarya paliurus
• Genomics
• Whole-genome duplication
• Triterpenoid
• Resequencing

Cyclocarya paliurus is a relict plant species that survived the last glacial period and shows a population expansion recently. Its leaves have been traditionally used to treat obesity and diabetes with the well-known active ingredient cyclocaric acid B. Here, we presented three C. paliurus genomes from two diploids with different flower morphs and one haplotype-resolved tetraploid assembly. Comparative genomic analysis revealed two rounds of recent whole-genome duplication events and identified 691 genes with dosage effects that likely contribute to adaptive evolution through enhanced photosynthesis and increased accumulation of triterpenoids. Resequencing analysis of 45 C. paliurus individuals uncovered two bottlenecks, consistent with the known events of environmental changes, and many selectively swept genes involved in critical biological functions, including plant defense and secondary metabolite biosynthesis. We also proposed the biosynthesis pathway of

• 单位
  Nanjing Forestry University; Fujian Agriculture and Forestry University