Novel, high accuracy models for hepatocellular carcinoma prediction based on longitudinal data and cell-free DNA signatures

作者:Fan, Rong; Chen, Lei; Zhao, Siru; Yang, Hao; Li, Zhengmao; Qian, Yunsong; Ma, Hong; Liu, Xiaolong; Wang, Chuanxin; Liang, Xieer; Bai, Jian; Xie, Jianping; Fan, Xiaotang; Xie, Qing; Hao, Xin; Wang, Chunying; Yang, Song; Gao, Yanhang; Bai, Honglian; Dou, Xiaoguang; Liu, Jingfeng; Wu, Lin; Jiang, Guoqing; Xia, Qi; Zheng, Dan; Rao, Huiying; Xia, Jie; Shang, Jia; Gao, Pujun; Xie, Dongying; Yu, Yanlong; Yang, Yongfeng; Gao, Hongbo; Liu, Yali; Sun, Aimin; Jiang, Yongfang; Yu, Yanyan; Niu, Junqi
来源:Journal of Hepatology, 2023, 79(4).
DOI:10.1016/j.jhep.2023.05.039

摘要

Background & Aims: Current hepatocellular carcinoma (HCC) risk scores do not reflect changes in HCC risk resulting from liver disease progression/regression over time. We aimed to develop and validate two novel prediction models using multivariate longitudinal data, with or without cell-free DNA (cfDNA) signatures. Methods: A total of 13,728 patients from two nationwide multicenter prospective observational cohorts, the majority of whom had chronic hepatitis B, were enrolled. aMAP score, as one of the most promising HCC prediction models, was evaluated for each patient. Low-pass whole-genome sequencing was used to derive multi-modal cfDNA fragmentomics features. A longitudinal discriminant analysis algorithm was used to model longitudinal profiles of patient biomarkers and estimate the risk of HCC development. Results: We developed and externally validated two novel HCC prediction models with a greater accuracy, termed aMAP-2 and aMAP-2 Plus scores. The aMAP-2 score, calculated with longitudinal data on the aMAP score and alpha-fetoprotein values during an up to 8-year follow-up, performed superbly in the training and external validation cohorts (AUC 0.83-0.84). The aMAP-2 score showed further improvement and accurately divided aMAP-defined high-risk patients into two groups with 5-year cumulative HCC incidences of 23.4% and 4.1%, respectively (p = 0.0065). The aMAP-2 Plus score, which incorporates cfDNA signatures (nucleosome, fragment and motif scores), optimized the prediction of HCC development, especially for patients with cirrhosis (AUC 0.85-0.89). Importantly, the stepwise approach (aMAP-> aMAP-2-> aMAP-2 Plus) stratified patients with cirrhosis into two groups, comprising 90% and 10% of the cohort, with an annual HCC incidence of 0.8% and 12.5%, respectively (p <0.0001). Conclusions: aMAP-2 and aMAP-2 Plus scores are highly accurate in predicting HCC. The stepwise application of aMAP scores provides an improved enrichment strategy, identifying patients at a high risk of HCC, which could effectively guide individualized HCC surveillance. (c) 2023 The Author(s). Published by Elsevier B.V. on behalf of European Association for the Study of the Liver. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

  • 单位
    中山大学; 上海交通大学; 郑州大学; 佛山市第一人民医院; 内蒙古医学院; 中国科学院研究生院; 1; 吉林大学; 华中科技大学; 中国医科大学; 浙江大学; 北京大学; 南方医科大学; 河北医科大学; 山东大学