Metal-Dependent DNA Base Pairing of 5-Carboxyuracil with Itself and All Four Canonical Nucleobases

作者:Takezawa, Yusuke; Suzuki, Akira; Nakaya, Manabu; Nishiyama, Kotaro; Shionoya, Mitsuhiko*
来源:Journal of the American Chemical Society, 2020, 142(52): 21640-21644.
DOI:10.1021/jacs.0c11437

摘要

A 5-carboxyuracil (caU) nucleobase was found to pair not only with A (caU-A) by hydrogen bonding but also with other DNA nucleobases by metal coordination bonding. Metal-dependent formation of caU-Cu-II-caU, caU-Hg-II-T, caU-Ag-I-C, and caU-Cu-II-G pairs was demonstrated by duplex melting analysis and mass spectrometry. The duplexes containing caU-X (X = caU, T, C, and G) were significantly stabilized in the presence of the corresponding metal ions, while the DNA duplexes containing the caU-A pairs were destabilized by the addition of Cu-II. These results suggest that the hybridization partner of caU-containing DNA strands can be altered by metal complexation. As a result, this study provides a new direction to integrate caU nucleobases to construct diverse metallo-DNA supramolecules and metal-responsive DNA devices.